Lu Wang, Fangqing Liu, Lan Zhao, Yaling Xu, Tianyu Zhang, Longying Wen. 2023: A test of genetic divergence of a bird existing in the Sichuan Basin and its surrounding mountain ranges. Avian Research, 14(1): 100144. DOI: 10.1016/j.avrs.2023.100144
Citation: Lu Wang, Fangqing Liu, Lan Zhao, Yaling Xu, Tianyu Zhang, Longying Wen. 2023: A test of genetic divergence of a bird existing in the Sichuan Basin and its surrounding mountain ranges. Avian Research, 14(1): 100144. DOI: 10.1016/j.avrs.2023.100144

A test of genetic divergence of a bird existing in the Sichuan Basin and its surrounding mountain ranges

Funds: 

the National Science Foundation of China 31372171

Leshan Normal University research grants 205210094

Leshan Normal University research grants ZZ201805

Leshan Normal University research grants CGZZ202002

Leshan Normal University research grants 205220114

Leshan Normal University research grants DGZZ202006

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  • Corresponding author:

    E-mail address: lywen02@126.com (L. Wen)

  • Received Date: 26 Mar 2023
  • Rev Recd Date: 24 Sep 2023
  • Accepted Date: 06 Oct 2023
  • Available Online: 10 Jan 2024
  • Publish Date: 05 Nov 2023
  • Island ecosystems, serving as natural laboratories, facilitate geographical isolation, ecological specialization, and species divergence. The Sichuan Basin, surrounded by mountain ranges, represents a typical continental island due to its marked environmental spatial heterogeneity. This heterogeneity may contribute to geographical isolation and habitat heterogeneity, resulting in genetic divergence within populations. Therefore, we used the White-browed Laughingthrush (Garrulax sannio) as a model specimen to investigate the genetic divergence in the Sichuan Basin and its surrounding mountain ranges, given its presence in various habitats within and beyond this basin. Employing a RAD-seq dataset of 140 G. sannio individuals from 17 distinct ecological zones in the Sichuan Basin and its surrounding mountain ranges, we conducted PCA, population structure analysis, phylogenetic tree construction, and gene flow analysis to comprehensively analyze G. sannio groups. Additionally, in conjunction with geographical and ecological data, we performed isolation by distance, isolation by environment, PCA, and latent factor mixed model analysis to identify factors influencing the genetic divergence among these G. sannio groups. In summary, the 17 G. sannio groups were categorized into high-elevation, medium-elevation, and low-elevation groups. Genetic divergence in G. sannio may be attributed to both geographical distance and key ecological factors, particularly elevation and key climatic variables. Notably, the high-elevation group exhibited a greater number of SNPs and selected genes associated with the key ecological factors compared to the low-elevation group. The ADCY9 gene and several associated key pathways were identified as crucial elements driving ecological adaptation (elevation and key climatic variables) in the high-elevation group. Furthermore, climate changes during the glacial cycles may have facilitated gene flow among these groups residing in the Sichuan Basin and its surrounding mountain ranges. Our findings provide evidence of genetic divergence in G. sannio influenced by the geographical distance and key ecological factors between the Sichuan Basin and its surrounding mountain ranges. These results lay the groundwork for future research on the molecular systematics of continental islands.

  • Interactions between brood parasites and their hosts are regarded as a model system for the study of coevolution (Davies 2000; Soler 2014). Brood parasites lay their eggs in hosts' nests and subsequently transfer the cost of parental care to the hosts. This selects for the evolution of defenses in hosts, which in turn selects for reciprocal counter-adaptations in the parasite. Although there is a vast literature on the reciprocal adaptations of brood parasites and their hosts at the pre-laying (Davies and Welbergen 2009; Feeney et al. 2012), egg (Davies and Brooke 1988; Starling et al. 2006; Spottiswoode and Stevens 2010; Yang et al. 2010, 2016a; Stoddard and Stevens 2011) and chick stages (Langmore et al. 2003; de Mársico et al. 2012; Yang et al. 2015b), less is known about how the coevolution between parasites and hosts reach the current outcome of these arms races (Kilner and Langmore 2011). In particular, relatively few studies have investigated whether host defenses can result in escaping from brood parasitism.

    Although the coevolutionary outcome of an arms race is difficult to elucidate strong indirect evidence has been found to demonstrate that some hosts have defeated brood parasites by maintaining strong anti-parasitism defenses such as egg rejection despite a lack of current parasitism. Such evidence has been obtained for several suspected former hosts of cuckoos. For example, the Hume's Leaf Warbler (Phylloscopus humei), which is not currently parasitized, shows high inter-clutch variation in egg size and rejects eggs that differ in size to their own clutch, thus preventing egg matching by the parasite and allowing successful prevention of parasitism (Marchetti 2000).

    Compared to Hume's Leaf Warbler, other potential hosts in Asia present more of a conundrum if they lack egg rejection behavior, yet they are not exploited by brood parasites. One explanation is that these hosts may have won the arms race by showing specific defenses at other stages (e.g., chick stage: Grim 2006) of the breeding cycle. For example, the Least Flycatchers (Empidonax minimus) experience rates of parasitism six times lower than sympatric Yellow Warblers (Dendroica petechial) (Briskie et al. 1990). This difference was attributed in large part to the more aggressive and effective nest defense by Least Flycatchers (Briskie et al. 1990). Although most studies have been done on coevolutionary interactions at the pre-laying or egg stages of the breeding cycle, hosts may also show defenses at the chick stage by deserting (Langmore et al. 2003; Grim 2007) or evicting (Sato et al. 2010; Yang et al. 2015b) alien nestlings. However, without studying several, and ideally all, breeding stages (e.g., pre-laying, egg, chick), it is hard to tell why some hosts escape parasitism or reduce its rate substantially (Briskie et al. 1990; Grim et al. 2011; Li et al. 2016).

    Sparrow species (Passer spp.) are widespread across the Old World and feed their offspring on insects (Baumgartner 1937; Seel 2008; Girard et al. 2012; Yang et al. 2015a), which should provide a suitable diet for cuckoo chicks. Generally their egg recognition capacities are absent or negligible and some of them (e.g. House Sparrow P. domesticus) were suggested to be unsuitable model species for egg rejection experiments on a global scale (Manna et al. 2017). However, they have never been used as hosts by any parasitic cuckoo (Moksnes and Røskaft 1995; Yang et al. 2012b) and till now this puzzle has not been reasonably explained. These include a variety of sparrow species such as Tree Sparrows, House Sparrows, and Russet Sparrow (Passer cinnamomeus). There have been two hypotheses that tried to explain this puzzle. First, hosts may escape parasitism by breeding in urban areas as a specific adaptation or a byproduct (Liang et al. 2013). Second, they may build nest in small cavities that exclude larger parasites (Davies 2000). However, none of these explanations presents a satisfactory solution to this puzzle. On one hand, some host species living in urban areas are exploited by brood parasites (Yang et al. 2012b). On the other hand, in addition to cavity nests, sparrows also build open nests in trees (Yang et al. 2015a), and most importantly cavity nests cannot prevent small parasites (e.g. Asian Emerald Cuckoo Chrysococcyx maculatus) from entering. Additionally, even medium to large sized cuckoos can enter nest boxes to parasitize cavity-nesting hosts, including Common Redstart (Phoenicurus phoenicurus) (Samaš et al. 2016), tits (Parus spp.) and flycatchers (Ficedula spp.) (Deng 2013; Grim et al. 2014; Liang et al. 2016). Therefore, all the current explanations cannot resolve why sparrows have never been utilized as hosts by any parasitic cuckoo, even though they are abundant and widespread.

    Here we conducted parasitic experiments at both egg and chick stages of the breeding cycle to investigate the egg and chick recognition abilities of Russet Sparrow, a widespread potential cuckoo host but not currently utilized by any parasitic cuckoos. Because nest sanitation was hypothesized to be a pre-adaptation of egg recognition (Rothstein 1975; Moskát et al. 2003) that hosts generally show stronger recognition toward non-egg-shaped objects than egg-shaped objects (Yang et al. 2015c), we also tested nest sanitation behavior in Russet Sparrows. This study aims to determine whether egg or chick stage defenses can explain the lack of parasitism of this species by brood parasites.

    Experiments on Russet Sparrows were conducted in Kuankuoshui (KKS) National Nature Reserve during April‒August 2013. KKS (28°10ʹN, 107°10ʹE) lies in a subtropical evergreen broadleaf forest in southwestern China. The mean annual temperature and precipitation are 13.4 ℃ and 1330 mm, respectively (Yang et al. 2010).

    The Old World sparrows are among the most familiar of all bird species (Allende et al. 2001). The Russet Sparrow, was formerly recognized as P. rutilans (Mlíkovský 2011; also see Yang et al. 2012a). The Russet Sparrow is a sexually dimorphic species and prefers light woodland, although they may sometimes be found in towns and agricultural areas (Yang et al. 2012a). They mainly use dry grasses for nesting and the nest structures depend on the cavity size they choose. In the present study all nests of Russet Sparrows for experiments were inside nest boxes.

    Artificial parasitism during the egg stage was performed in sparrow nests on the day after clutch completion or at the beginning of incubation. We artificially parasitized the nests with model eggs, models that were coin-shaped or stick-shaped, or real eggs of alien species from cross-fostering experiment (see below). The use of stick and coin models allowed us to test whether Russet Sparrow shows basic nest sanitation behavior, which is believed to be a pre-requisite for the evolution of egg rejection (Guigueno and Sealy 2012; Yang et al. 2015c). Each sparrow nest received one of the following treatments: (1) blue model eggs; (2) model coins; and (3) model sticks. Model eggs, model coins and model sticks were all made of polymer clay with a mass of ca. 1.45 g similar to but slightly lighter than that of sparrow eggs (1.78 ± 0.12 g, n = 10). Model coins were pie-shaped with a diameter of ca. 22 mm and ca. 6 mm in thickness while model sticks were cylinder-shaped with a length of ca. 21 mm and ca. 11 mm diameter in cross section. For each nest, one egg or model was inserted into the nests of sparrows, and they were monitored on a daily basis for 6 days. Results of the experiments were classified as acceptance (alien objects are warm and intact and being incubated with eggs) or rejection (alien objects gone or left cold in the nest) (Yang et al. 2010). No experimental nests were deserted (Table 1).

    Table  1.  Outcome of experimental parasitism in Russet Sparrows
    Parasite model egg Accepted Ejected Total
    Blue model egg 11 (100.0) 0 11
    Blue model coin 5 (27.8) 13 18
    Blue model stick 6 (50.0) 6 12
    Real alien egga 10 (100.0) 0 10
    aReal eggs of 10 alien species from cross-fostering experiment. Numbers in brackets refer to the percentage of acceptance (%)
     | Show Table
    DownLoad: CSV

    In total alien eggs from 10 sympatric species were used in cross-fostering experiments for Russet Sparrow. Eggs (n = 15 nests) or newly hatched chicks (n = 2 nests) of similar mass were inserted into sparrow nests and their fate was monitored daily. We chose these 10 alien species because they are sympatric with Russet Sparrow in the same study area and their nests can be found during the breeding season of the sparrow. However, the choice is random and alien chicks with similar body mass as Russet Sparrow were used during the experiment. Nests of Russet Sparrow received one of three treatments: (1) cuckoo group-host nests were manipulated to contain one cuckoo chick; (2) foreign group-host nests were manipulated to contain two alien chicks of a non-cuckoo species; or (3) mixed group-each nest was manipulated to two non-cuckoo alien chicks and two host chicks. Considering the ethical problem of potential risk of death in alien chicks, for each alien species we only used two samples (i.e. two nests) or one sample (i.e. one nest). Furthermore, two kinds of control groups were included: (1) manipulated control-cross-fostering of the same sparrow species between different clutches; and (2) non-manipulated control-visits without cross-fostering manipulation. Small portable far infrared cameras (108.9 mm × 32.8 mm × 12.5 mm in size and 90 g in weight, JWD DV-58, Jingwah Digital Technology Co., Ltd., Shenzhen, China) were set up inside experimental nest boxes to monitor feeding frequency of host chicks and alien chicks by host parents. Feeding frequency was summarized from video records to investigate feeding preferences by sparrow parents if any existed. We recorded host provisioning rates for 48 h of video recordings for the cuckoo group and 30 h for the foreign group, and 108 h for the mixed group. For the mixed group, host chicks with parasites of Ashy-throated Parrobtill (Paradoxornis alphonsianus), Yellow-throated Bunting and Red-billed Leiothrix (Leiothrix lutea) were recorded. For the foreign group, video records included Brown-breasted Bulbul (Pycnonotus xanthorrhous), Green-backed Tit (Parus monticolus), Ashy-throated Parrotbill, and Red-billed Leiothrix. For the cuckoo group, Lesser Cuckoo (Cuculus poliocephalus) was recorded. The average feeding frequency per chick per hour was calculated for each observed nest and the results are shown in Fig. 3.

    Figure  3.  Feeding frequency of nestlings in the mixed (a) and cuckoo/foreign (b) groups of cross-fostering experiments. Each dot refers to the average feeding frequency per chick per hour of parasite or host in each observed nest

    IBM SPSS Statistics 20.0 for Windows (IBM Inc.) was used for the calculations and the data were presented as mean ± SD. The average feeding frequency of hosts and parasites in the mixed group was calculated and compared by paired sample t test. Scatter plots were generated for the feeding frequency with days to present the tendency of feeding.

    In response to artificial parasitism at the egg stage, Russet Sparrow accepted 100% of model eggs and real eggs (from cross-fostering experiments). By contrast, Russet Sparrows accepted 27.8% of model coins and 50% of model sticks. In the cross-fostering experiment, all dead chicks died in Russet Sparrow nests except one case of Tree Sparrow (Passer montanus) chick (Figs. 1, 2). No rejection behavior was detected in control groups. In two cases of the mixed groups, Russet Sparrow own chicks also died. All dead chicks died because of starvation or nest desertion except one case that a female sparrow ejected one live chick of yellow-throated bunting (Emberiza elegans) from its nest (Fig. 1). Survival time of rejected chicks varied from two to 14 days (Fig. 2). Only one case was confirmed as ejection because Russet Sparrows did not identify alien chicks during begging as alien chicks disappeared unexpectedly at any time during 13 days (two to 14 days) before we detected the disappearance.

    Figure  1.  Chick rejection behavior in Russet Sparrows. a Russet Sparrow nest with two bunting chicks (indicated by black arrows) and 2 Russet Sparrow chicks (between the two bunting chicks). b Russet Sparrow parents returned to the nest and started to hold a bunting chick in its beak. c Russet Sparrow parents ejected the bunting chick
    Figure  2.  Summary results for cross-fostering experiments in Russet Sparrows. Russet sparrows on Y-axis refer to host nestlings in mixed groups with parasite species above, respectively. Species with solid lines or without lines below indicate that they succeeded or failed to fledge, respectively. Species with dashed lines indicate that both circumstances (success or failure) exist

    In the cross-fostering experiment, host parents did not feed parasites for 2 days up to 15 days depending on parasite species (Fig. 2). Furthermore, the frequency of feeding of parasites in foreign and cuckoo groups decreased as they grew larger and finally hosts stopped feeding them (Fig. 3). However, host parents kept on feeding their own nestlings but abandoned alien nestlings in the mixed group. Therefore, the parasite chicks received much less food than host chicks in the mixed group and finally starve to death (t = 4.62, df = 4, p = 0.01, paired sample t test; Fig. 3).

    Our parasitism experiments showed that the Russet Sparrow has no egg recognition abilities. For house sparrows in Europe, although rejection of conspecific eggs was reported (Lopez de Hierro and Moreno-Rueda 2010; Soler et al. 2011; but see Yang et al. 2015a, 2016b), Manna et al. (2017) conducted parasitism experiments in different geographic populations and suggested that the House Sparrow rejection capacity was weak and negligible. In contrast, Russet Sparrow recognized and ejected model coins and sticks, which revealed a certain level of nest cleaning behavior, but lower than in host species with intermediate (e.g., Barn Swallow: 74 and 68% for coins and sticks respectively; Yang et al. 2015c) or strong (e.g., Great Reed Warbler Acrocephalus arundinaceus: 93.1 and 93.5% for coins and sticks respectively; Moskát et al. 2003) egg rejection capacity.

    Cross-fostering experiments indicated that Russet Sparrows have chick recognition abilities. According to our results, newly hatched alien chicks, which cannot produce begging calls yet, were ejected or starved to dead in sparrow nests, which implied that Russet Sparrow can identify alien chicks by visual cues. Generally in passerines, nestlings produce begging calls only after several days post-hatch (e.g., Colombelli-Négrel et al. 2012) and our observation is consistent with previous studies. However, they spend variable time of making a decision from 2 to 14 days. Therefore, both the visual and vocal contrasts between alien chicks and growing chicks of sparrows may both influence chick cognition in Russet Sparrow. Combined with previous studies, unlike egg recognition that occurs very fast (generally less than 3 days), chick recognition shows large variation (Langmore et al. 2003: 3‒6 days; Grim et al. 2003: ca. 14 days). Furthermore, Russet Sparrows reject alien chicks in all cross-fostered groups, which indicated that they do not need their own chicks as comparison (see also Grim 2006). Similarly, previous studies also indicated that generally hosts do not need their own eggs as comparison for alien egg rejection (Moskát and Hauber 2007; Wang et al. 2015, but see Yang et al. 2014). One case of three Tree Sparrows succeeded to fledge from a host nest, which may be explained by the similarity between their chicks because they are closely related sister-species (Jetz et al. 2012). Additionally, two cases of Russet Sparrows in mixed groups also failed to fledge, which implied that recognition error may exist. For example, Sato et al. (2010) reported chick recognition error in the Large-billed Gerygone (Gerygone magnirostris) host when they rejected the Little Bronze-cuckoo (Chrysococcyx minutillus) nestlings, whilst few studies revealed recognition error (Grim et al. 2003; Langmore et al. 2003; Yang et al. 2015b). Further studies are needed in the future to test these presumptions.

    Although initial study suggested that chick recognition is maladaptive and difficult to evolve (Lotem 1993), an increasing number of studies have shown that chick recognition can evolve as an adaptation toward brood parasitism (Grim et al. 2003; Langmore et al. 2003; Grim 2011; Yang et al. 2015b). However, chick recognition is not as common as egg recognition, and this may be explained by the rarer enemy hypothesis which suggests that chick recognition is prone to evolve only in hosts without egg recognition as a consequence of a release from a selection pressure against parasites at an earlier developmental stage, i.e., egg stage (Grim 2006).

    In summary, our studies showed that Russet Sparrows have no egg recognition ability, but recognize their own nestlings and eject alien chicks or starve them to death. By rejecting nestlings of foreign species, Russet Sparrows have succeeded to escape from the brood parasitism by cuckoos and other parasites.

    This study showed that Russet Sparrows have no egg recognition ability, but recognize their own nestlings and eject alien chicks or starve them to death. They may use visual cues in chick discrimination, although they accept sister species Tree Sparrows. By rejecting nestlings of foreign species, Russet Sparrows have succeeded to escape from the brood parasitism by cuckoos and other parasites. The present study shed light on the puzzle why some species are not utilized by cuckoo parasites as hosts, and perhaps that Asian hosts are becoming a great model for the study of parasite-host coevolution. In addition, our study highlighted the necessity to test in more host species for chick discrimination (ideally those that are known egg acceptors-see the rarer enemy effect, Grim 2006).

    WL and CY conceived and designed the experiment, JH and TS conducted the experiments and collected field data. APM provided new ideas for this manuscript. JH and CY performed data analyses and wrote an early version of the manuscript. WL and APM revised and improved the manuscript. All authors read and approved the final manuscript.

    We thank Junqiu Wu, Guoxian Liang, and Ping Ye for their assistance with fieldwork, and the help and cooperation from Kuankuoshui National Nature Reserves. We are grateful to two anonymous reviewers for providing constructive and valuable comments that significantly improved the quality of the manuscript.

    The authors declare that they have no competing interests.

    The datasets used in the present study are available from the corresponding author on reasonable request.

    Not applicable.

    The experiments comply with the current laws of China where they were performed. Ethical concerns were given the highest priority and we kept sample sizes of the cross-fostering experiment to a minimum (Taborsky 2010; Grim et al. 2011). Experimental procedures were in agreement with the Animal Research Ethics Committee of Hainan Provincial Education Centre for Ecology and Environment, Hainan Normal University (permit no. HNECEE-2011-002). Fieldwork was carried out under the permission from Kuankuoshui National Nature Reserves, China. Experiments, including cross-fostering of chicks, were carried out following standard protocols widely used in similar studies (Yang et al. 2013, 2016b).

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