Herman L Mays Jr, Bailey D McKay, Dieter Thomas Tietze, Cheng-Te Yao, Lindsey N Miller, Kathleen N Moreland, Fumin Lei. 2015: A multilocus molecular phylogeny for the avian genus Liocichla (Passeriformes: Leiothrichidae: Liocichla). Avian Research, 6(1): 17. DOI: 10.1186/s40657-015-0025-y
Citation: Herman L Mays Jr, Bailey D McKay, Dieter Thomas Tietze, Cheng-Te Yao, Lindsey N Miller, Kathleen N Moreland, Fumin Lei. 2015: A multilocus molecular phylogeny for the avian genus Liocichla (Passeriformes: Leiothrichidae: Liocichla). Avian Research, 6(1): 17. DOI: 10.1186/s40657-015-0025-y

A multilocus molecular phylogeny for the avian genus Liocichla (Passeriformes: Leiothrichidae: Liocichla)

More Information
  • Corresponding author:

    Herman L Mays Jr, maysh@marshall.edu

  • Received Date: 17 Feb 2015
  • Accepted Date: 20 Jul 2015
  • Available Online: 24 Apr 2022
  • Publish Date: 04 Aug 2015
  • Background 

    Historically the babblers have been assigned to the family Timaliidae but several recent studies have attempted to rest the taxonomy of this diverse passerine assemblage on a more firm evolutionary footing. The result has been a major rearrangement of the group. A well-supported and comprehensive phylogeny for this widespread avian group is an important part of testing evolutionary and biogeographic hypotheses, especially in Asia where the babblers are a key component of many forest ecosystems. However, the genus Liocichla is poorly represented in these prior studies of babbler systematics.

    Methods 

    We used a multilocus molecular genetic approach to generate a phylogenetic hypothesis for all five currently recognized species in the avian genus Liocichla. Multilocus DNA sequence data was used to construct individual gene trees using maximum likelihood and species trees were estimated from gene trees using Bayesian analyses. Divergence dates were obtained using a molecular clock approach.

    Results 

    Molecular data estimate a probable window of time for the origin for the Liocichla from the mid to late Miocene, between 5.55 and 12.87 Ma. Despite plumage similarities between the insular Taiwan endemic, L. steerii, and the continental L. bugunorum and L. omeiensis, molecular data suggest that L. steerii is the sister taxon to all continental Liocichla. The continental Liocichla are comprised of two lineages; a lineage containing L. omeiensis and L. bugunorum and a lineage comprised of L. phoenicea and L. ripponi. The comparatively early divergence of L. steerii within the Liocichla may be illusory due to extinct and therefore unsampled lineages. L. ripponi and L. phoenicea are parapatric with a Pleistocene split (0.07-1.88 Ma) occurring between an Eastern Himalayan L. phoenicea and a Northern Indochina distributed L. ripponi. L. bugunorum and L. omeiensis underwent a similar split between the Eastern Himalaya (L. bugunorum) and Central China (L. omeiensis) divided by the Hengduan Mountains.

    Conclusions 

    This study supports an origin of the Liocichla occurring sometime prior to the Miocene-Pliocene boundary, a period of significant climatic upheaval in Asia. The biogeographical patterns within the Liocichla mirror those of other birds in the region and allude to common geological and climatic drivers of avian diversification in Asia.

  • A heron bird, the White-eared Night Heron (hereafter WENH), Gorsachius magnificus, once, in the 1990s, was believed being the extremely rare one amongst those birds endemic to southern China and hence was considered Critically Endangered (CR) (Collar et al., 1994), then, from the beginning of the 21st century, the Endangered (EN) (BirdLife International, 2000, 2001) and "the most enigmatic Ardeid bird of the world" (Fellowes et al., 2001), furthermore, even as late as in 2004, the bird was still treated being a good sample showing "the main vacuity of knowledge of those critically endangered and endangered birds in China" (BirdLife International, 2004). Whereas, in the last few years, the bird has made us to add, in an accelerated rate, more and more marks of its records on map, showing much larger a distributional range that that night heron could have far been able to occupy.

    Those new findings, firstly emerging from the beginning of the 21st century in Jiangxi of central southern China (He and Lin, 2004), led us to think that for a Ardeid bird occurring in such a vast area of southern China with "very similar in general character and natural productions" (Styan, 1902), why so far being reported only in such a strange horseshoe-shaped range of its known appearance (He et al., 2007a)?! With such a doubtful uncertainty in mind, we talked with colleagues in southern China provinces, convincing them to pay more attention on the possible occurrence of the bird particularly in the central south and southwestern China.

    Very positive results have actually come out in the last five years — in fact, it took more than two years for confirming the occurrence of the WENH bird in Hunan (province) of central southern China (Li, 2006), about one year for finding the bird in Yunnan of far SW China (Zhao et al., 2006), then, a bit to our surprise, only three months for virtually recognizing the appearance of the bird in Guizhou of SW China (Li et al., 2008), and, quite recently, the record came out from SE Sichuan. Though gaps still seem to be appearing somewhere in SW China, the whole range of the occurrence of WENH that we now could have far learned looks much objectively rational and reasonable than ever before.

    In fact, in early 2007, we had already outlined, though roughly, much larger a distributional range of the WENH bird (He et al., 2007a), and, soon after in the same year, based upon the very updated knowledge and understanding, we suggested that the WENH bird might be considered being of 11 subpopulations (He et al., 2007b), which made the viewpoint we offered in early 2007 dramatically out of date. Furthermore, the currently new findings of the bird (Yang et al., 2007; Li et al., 2008; Lin et al., 2008) evidentially revealed that that suggestion is quite rational and practical (See Fig. 1).

    Figure  1.  Sketch map of occurrence of the White-eared Night Heron. Localities on the map presented in numerals are to follow Threatened Birds of Asia (BirdLife International, 2001) but for those localities in Guangxi only the ones at the county level remained; whilst, those localities presented in letters are either the newly found ones or the historical ones but newly annotated (He et al., 2007a, 2007b); in most cases the localities on the map are to show the central town of the county, and those letters in red color are to illustrate the localities reported since 2008.
    BK = Baokang, BS = Baise, B & X = Ban Thi & Xuan Lac, Ch'An = Chun'an, DJK = Danjiangkou, GT = Gutian, HX = Hengxian, J'An = Jing'an, JD = Jingde, JGSh = Jinggangshan, LL = Lung Ly (Vietnam), LM = Longmen, LN = Longnan, LS = Leishan, LSh = Lushan, LuZ = Luzhai, LY = Liuyang, LZh = Liuzhou, MShH = Manshuihe, NJ = Nanjian, PJ = Pingjiang, PT = Putian, R'An = Rong'An, RY = Ruyuan, SCh = Suichuan, TN = Taining, WF = Wufeng, WeiY = Weiyuan, WX = Wuxuan, WY = Wuyuan, XCh = Xuancheng, XH = Xinhua, XP = Xinpin, XY = Xinyu, YN = Yongning, ZhF = Zhongfang. For Chinese names of the localities mentioned above, please see Appendix 1.

    It is interesting and meaningful to look at the sketch map of localities of the WENH bird recorded so far, from historical to very present, and, for a brief review on the development of the knowledge and understanding on this night heron bird. It therefore might be well noticed that:

    1) It took (our species) a hundred years, from 1899, when Whitehead for the first time collected the skin of the WENH bird on Hainan island in the South China Sea and then Ogilvie-Grant recognized it a nova species to science, till 2001 that BirdLife International issued its milestone work Threatened Birds of Asia, to learn the bird though widely occurring in southern China, but being highly sparse, separated, or fragmented of its appearance, with some 20 localities at county level, only (see those numeral marks on the sketch map);

    2) Whilst, on the contrary, more than 30 new localities of the bird got reported during the last 10 years with five more provinces, from southern central China (Jiangxi and Hunan) to the whole SW China (Yunnan, Guizhou, and Sichuan) in which there had been totally no WENH bird record in the past, included, and, therefore, making the distributional range of the bird at least twice as large as it used to be thought.

    Although we have re-found the bird at a locality in Fujian [Fokien] rather close to the site that the bird once being frequently seen before the 1930s (Caldwell and Caldwell, 1931), which might illustrate a long-term occurrence of the bird to the region, still, we look forward to hearing, sooner or later, the rediscovery of the bird on Hainan Island, the type locality of the species, bringing to us such a true fact that the White-eared Night Heron could have survived for century long at a low population density in a rather isolated habitat of an island.

    Whereas, for those very recent new findings, to us, we could hardly say that we have newly found them there, since those WENH birds might have been living there for generations, but, simply, we did not know the true fact since so far. It is hence more properly to say, rather, that those birds are to tell us or to show to us that they are such kind a tribe of bird much preferring to be living beyond human sights, and, on the whole, "the conduct of the bird was more like that of a bittern than of a heron" (Caldwell and Caldwell, 1931).

    Now, what we would like to say is, supposing if the WENH is quite a new bird to science only for 10 or 20 years since the first description of it to science, and/or, but, with such an amount of records from almost the whole region of southern China, as those marks in letters on the sketch map have shown, it would be more likely than not that nobody would think the bird is under threat. And, if we treat the WENH as one of the representative birds to the sub-tropic broad-leaf evergreen and deciduous forests in the whole region of southern China including SW China, those recent records might reveal that the bird has conquered the due vegetation zone quite successfully, showing almost a perfect occupation to the whole region. Definitely and doubtlessly, the WENH birds have done it so well.

    Even in late 2007, we had outlined a range of over 1000000 km2 that the WENH appeared in mainland China (He et al., 2007a) which soon extended to 1500000 km2 (He et al., 2007b), and now the range of the bird is up to 2500000 km2, according to the methodology recommended by the due Criteria for calculating the extent of occurrence for any species. In fact, the WENH is now, as far known, showing the largest distributional range amongst those birds endemic to southern China.

    When looking at the oval-shaped range of the WENH on the mainland China, what we surely can say is that no longer is the WENH in small and highly fragmented flocks but rather well-distributed, and, particularly, when looking at the two axes, both the longer and the shorter, of the ellipse, they are almost totally consisting of those sites which got reported quite recently, that is, for the longer started from XCh in Anhui of E China, westwards to WY – LSh – J'An – XY – PJ – LY – XH – ZhF – LSh – BS till XP and NJ in central Yunnan of far SW China, while, for the shorter, just along the ranges of Mt. Mufu and Mt. Luoxiao running from north to south along the border of Jiangxi and Hunan to the South China range and extended to central Guangdong, rather concentrated are of 10 newly reported sites.

    Our field studies on the White-eared Night Heron might be a good sample to illustrate that, for most threatened bird species mainly occurring in mainland China, the more the fieldwork being undertaken, the larger the range of the bird it might get revealed, particularly in southern China, a region strongly under monsoon impact and mostly with its vegetation of sub-tropic evergreen and deciduous forests.

    At last, the White-eared Night Heron has been so far nominated a flagship species to those threatened birds occurring in southern mainland China, or, the (Chinese) Oriental Region on the mainland, and, if the status of endangerment of the WENH could be considered downgraded accordingly, it would be to imply that other threatened birds occurring in the same region might get re-assessed in a more careful and objective way.

    Our sincere thanks might be due to Zoologische Gesellschaft für Arten und Populationsschutz e. V. (ZGAP) in Germany and the Royal Society for the Protection of Birds (RSPB) in the United Kingdom for their successive support on our field surveys in 2002–2003 (ZGAP) and then in 2005–2007 (ZGAP & RSPB) respectively.

    Chinese names for the localities appearing in Fig. 1

    BK = Baokang (保康), BS = Baise (百色), B & X = Ban Thi & Xuan Lac (越南北部), Ch'An = Chun'an (淳安), DJK = Danjiangkou (丹江口), GT = Gutian (古田), HX = Hengxian (横县), J'An = Jing'an (靖安), JD = Jingde (旌德), JGSh = Jinggangshan (井冈山), LL = Lung Ly (Vietnam/越南), LM = Longmen (龙门), LN = Longnan (龙南), LS = Leishan (雷山), LSh = Lushan (庐山), LuZ = Luzhai (鹿寨), LY = Liuyang (浏阳), LZh = Liuzhou (柳州), MShH = Manshuihe (漫水河), NJ = Nanjian (南涧), PJ = Pingjiang (平江), PT = Putian (莆田), R'An = Rong'An (融安), RY = Ruyuan (乳源), SCh = Suichuan (遂川), TN = Taining (泰宁), WF = Wufeng (五峰), WX = Wuxuan (武宣), WeiY = Weiyuan (威远), WY = Wuyuan (婺源), XCh = Xuancheng (宣城), XH = Xinhua (新化), XP = Xinpin (新平), XY = Xinyu (新余), YN = Yongning (邕宁), ZhF = Zhongfang (中方)

  • Collar NJ, Robson C (2007) Family Timaliidae (Babblers). In: del Hoyo J, Elliott A, Christie D (eds) Handbook of birds of the World. Lynx Edicions, Barcelona, pp 70-291
    Pfeifer R (2013) What is a babbler? Fascinating diversity of life strategies and challenge for systematists. Vogelwarte 51:117-126
    Alström P, Ericson PGP, Olsson U, Sundberg P (2006) Phylogeny and classification of the avian superfamily Sylvioidea. Mol Phylogenet Evol 38:381-397
    Alström P, Olsson U, Lei FM (2013) A review of the recent advances in the systematics of the avian superfamily Sylvioidea. Chin Birds 4:99-131
    Alström P, Hopper DM, Liu Y, Olsson U, Mohan D, Gelang M et al (2014) Discovery of a relict lineage and monotypic family of passerine birds. Biol Lett 10:20131067
    Cibois A (2003) Mitochondrial DNA phylogeny of babblers (Timaliidae). Auk 120:35-54
    Cibois A, Kalyakin MV, Han L-X, Pasquet E (2002) Molecular phylogenetics of babblers (Timaliidae): revaluation of the genera Yuhina and Stachyris. J Avian Biol 33:380-390
    Dong F, Li S-H, Yang X-J (2010) Molecular systematics and diversification of the Asian scimitar babblers (Timaliidae, Aves) based on mitochondrial and nuclear DNA sequences. Mol Phylogenet Evol 57:1268-1275
    Dong F, Wu F, Liu LM, Yang XJ (2010) Molecular phylogeny of the barwings (Aves: Timaliidae: Actinodura), a paraphyletic group, and its taxonomic implications. Zool Stud 49:703-709
    Gelang M, Cibois A, Pasquet E, Olsson U, Alström P, Ericson PGP (2009) Phylogeny of babblers (Aves, Passeriformes): major lineages, family limits and classification. Zool Scr 38:225-236
    Moyle RG, Andersen MJ, Oliveros CH, Steinheimer FD, Reddy S (2012) Phylogeny and biogeography of the core babblers (Aves: Timaliidae). Syst Biol 61:631-651
    Reddy S (2008) Systematics and biogeography of the shrike-babblers (Pteruthius): species limits, molecular phylogenetics, and diversification patterns across southern Asia. Mol Phylogenet Evol 47:54-72
    Reddy S, Cracraft J (2007) Old World Shrike-babblers (Pteruthius) belong with New World Vireos (Vireonidae). Mol Phylogenet Evol 44:1352-1357
    Oliveros CH, Reddy S, Moyle RG (2012) The phylogenetic position of some Philippine "babblers" spans the muscicapoid and sylvioid bird radiations. Mol Phylogenet Evol 65:799-804
    Beecher WJ (1953) A phylogeny of the Oscines. Auk 70:270-333
    Collar NJ (2006) A partial revision of the Asian babblers (Timaliidae). Forktail 22:85-112
    Delacour J (1946) Les timaliinés. L'Oiseau 16:7-36
    Mayr E, Amadon D (1951) A classification of recent birds. Am Mus Novit 1496:1-42
    Pasquet E, Bourdon E, Kalyakin MV, Cibois A (2006) The fulvettas (Alcippe, Timaliidae, Aves): a polyphyletic group. Zool Scr 35:559-566
    Barker FK, Cibois A, Schikler P, Feinstein J, Cracraft J (2004) Phylogeny and diversification of the largest avian radiation. Proc Natl Acad Sci USA 101:11040-11045
    Fregin S, Haase M, Olsson U, Alström P (2012) New insights into family relationships within the avian superfamily Sylvioidea (Passeriformes) based on seven molecular markers. BMC Evol Biol 12:157
    Gill F, Donsker D (eds) (2015) IOC World Bird List (v 5.2). doi:
    Collar NJ (2011) Taxonomic notes on some Asian babblers (Timaliidae). Forktail 27:100-102
    Dickinson EC, Christidis L (2014) The Howard and Moore complete checklist of the birds of the world, vol 2: Passerines, 4th edn. Christopher Helm, London
    Athreya R (2006) A new species of Liocichla (Aves: Timaliidae) from Eaglenest Wildlife Sanctuary, Arunachal Pradesh, India. Indian Birds 2:82-94
    Fu Y, Dowell SD, Zhang Z (2013) Emei Shan Liocichla: population, behavior and conservation. Chin Birds 4:260-264
    Peterson AT, Papeş M (2006) Potential geographic distribution of the Bugun Liocichla Liocichla bugunorum, a poorly-known species from north-eastern India. Indian Birds 2:146-149
    McKay BD, Mays HL Jr, Peng Y-W, Kozak KH, Yao C-T, Yuan H-W et al (2010) Recent range-wide demographic expansion in a Taiwan endemic montane bird, Steere's Liocichla (Liocichla steerii). BMC Evol Biol 10:71
    Dickinson EC (2003) The Howard and Moore complete checklist of the birds of the world, 3rd edn. Christopher Helm, London
    Luo X, Qu YH, Han LX, Li S-H, Lei FM (2009) A phylogenetic analysis of laughingthrushes (Timaliidae: Garrulax) and allies based on mitochondrial and nuclear DNA sequences. Zool Scr 38:9-22
    Päckert M, Martens J, Sun Y-H, Severinghaus LL, Nazarenko AA, Ting J et al (2011) Horizontal and elevational phylogeographic patterns of Himalayan and Southeast Asian forest passerines (Aves: Passeriformes). J Biogeogr 39:556-573
    de Bruyn M, Stelbrink B, Morley RJ, Hall R, Carvalho GR, Cannon CH et al (2014) Borneo and Indochina are major evolutionary hotspots for Southeast Asian biodiversity. Syst Biol 63:879-901
    Price TD, Hooper DM, Buchanan CD, Johansson US, Tietze DT, Alström P et al (2014) Niche filling slows the diversification of Himalayan songbirds. Nature 509:222-225
    Backström N, Fagerberg S, Ellegren H (2008) Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome. Mol Ecol 17:964-980
    Primmer CR, Borge T, Lindell J, Sætre GP (2002) Single-nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genome. Mol Ecol 11:603-612
    Marini MÂ, Hackett SJ (2002) A multifaceted approach to the characterization of an intergeneric hybrid manakin (Pipridae) from Brazil. Auk 119:1114-1120
    Moonsamy PV, Williams T, Bonella P, Holcomb CL, Höglund BN, Hillman G et al (2013) High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array™ System for simplified amplicon library preparation. Tissue Antigens 81:141-149
    Sorenson MD, Ast JC, Dimcheff DE, Yuri T, Mindell DP (1999) Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Mol Phylogenet Evol 12(2):105-114
    Chesser RT (1999) Molecular systematics of the Rhinocryptid genus Pteroptochos. Condor 101:439-446
    Groth JG (1998) Molecular phylogenetics of finches and sparrows: consequences of character state removal in cytochrome b sequences. Mol Phylogenet Evol 10(3):377-390
    Reddy S, Moyle RG (2011) Systematics of the scimitar babblers (Pomatorhinus: Timaliidae): Phylogeny, biogeography and species-limits of four species complexes. Biol J Linn Soc 102:846-869
    Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S et al (2012) Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647-1649
    Stephens M, Smith NJ, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978-989
    Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452
    Bruen TC, Philippe H, Bryant D (2006) A simple and robust statistical test for detecting the presence of recombination. Genetics 172:2665-2681
    Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23:254-267
    Hudson RR, Kreitman M, Aguadé M (1987) A test of neutral molecular evolution based on nucleotide data. Genetics 116:153-159
    Darriba D, Taboada GL, Ramón D, Posada D (2012) JModelTest 2: more models, new hueristics and parallel computing. Nat Methods 9:772
    Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307-321
    Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704
    Swofford DL (2003) PAUP* phylogenetic analysis using parsimony (*and Other Methods) v 4. Sinauer Associates, Sunderland
    Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu C-H, Xie D et al (2014) BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Comput Biol 10:e1003537
    Heled J, Drummond AJ (2010) Bayesian inference of species trees from multilocus data. Mol Biol Evol 27:570-580
    Bouckaert R (2015) bModelTest: Bayesian site model selection for nucleotide data. bioRxiv. . Accessed 28 July 2015
    Drummond AJ, Ho SYW, Phillips MJ, Rambaut A (2006) Relaxed phylogenetics and dating with confidence. PLoS Biol 4:e88
    Weir JT, Schluter D (2008) Calibrating the avian molecular clock. Mol Ecol 17:2321-2328
    Pereira SL, Baker AJ (2006) A mitogenomic timescale for birds detects variable phylogenetic molecular evolution and refutes the standard molecular clock. Mol Biol Evo 23:1731-1740
    Fleischer RC, McIntosh CE, Tarr CL (1998) Evolution on a volcanic conveyor belt: using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates. Mol Ecol 7:533-545
    Rambaut A, Suchard M, Xie D, Drummond AJ (2014) Tracer v 1.6. . Accessed 28 July 2015
    Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV (2012) Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Mol Biol Evol 29:2157-2167
    Zink RM, Barrowclough GF (2008) Mitochondrial DNA under siege in avian phylogeography. Mol Ecol 17(9):2107-2121
    Mays HL Jr, Doucet SM, Yao C-T, Yuan H-W (2006) Sexual dimorphism and dichromatism in Steere's Liocichla (Liocichla steerii). J Field Ornithol 77:437-443
    Dong F, Li S-H, Zou FS, Lei FM, Liang W, Yang JX et al (2014) Molecular systematics and plumage coloration evolution of an enigmatic babbler (Pomatorhinus ruficollis) in East Asia. Mol Phylogenet Evol 70:76-83
    McKay BD, Mays HL Jr, Wu YC, Li H, Yao C-T, Nishiumi I et al (2013) An empirical comparison of character-based and coalescent-based approaches to species delimitation in a young avian complex. Mol Ecol 22:4943-4957
    Reddy S, Sharief S, Yohe LR, Witkowski J, Hosner PA, Nyári ÁS et al (2015) Untangling taxonomic confusion and diversification patterns of the Streak-breasted Scimitar Babblers (Timaliidae: Pomatorhinus ruficollis complex) in southern Asia. Mol Phylogenet Evol 82:183-192
    Stoddard MC, Prum RO (2011) How colorful are birds? Evolution of the avian plumage color gamut. Behav Ecol 22:1042-1052
    Friedman NR, McGraw KJ, Omland KE (2014) Evolution of carotenoid pigmentation in caciques and meadowlarks (Icteridae): repeated gains of red plumage coloration by carotenoid C4-oxygenation. Evolution 68:791-801
    Omland KE, Lanyon SM (2000) Reconstructing plumage evolution in orioles (Icterus): repeated convergence and reversal in patterns. Evolution 54:2119-2133
    Molnar P (2005) Mio-Pliocene growth of the Tibetan plateau and evolution of East Asian climate. Palaeontol Electron 8:2A
    Zhang R, Jiang DB, Zhang ZS, Yu E (2015) The impact of regional uplift of the Tibetan Plateau on the Asian monsoon climate. Palaeogeogr Palaeoclimatol Palaeoecol 417:137-150
    Bird MI, Taylor D, Hunt C (2005) Palaeoenvironments of insular Southeast Asia during the Last Glacial Period: a savanna corridor in Sundaland? Quat Sci Rev 24:2228-2242
    Cerling TE, Harris JM, MacFadden BJ, Leakey MG, Quade J, Eisenmann V et al (1997) Global vegetation change through the Miocene/Pliocene boundary. Nature 389:153-158
    McKay BD (2011) A new timeframe for the diversification of Japan's mammals. J Biogeogr 39:1134-1143
    Johansson US, Alström P, Olsson U, Ericson PGP, Sundberg P, Price TD (2007) Build-up of the Himalayan avifauna through immigration: a biogeographical analysis of the Phylloscopus and Seicercus warblers. Evolution 61:324-333
    Qu YH, Song G, Gao B, Quan Q, Ericson PGP, Lei FM (2014) The influence of geological events on the endemism of East Asian birds studied through comparative phylogeography. J Biogeogr 42:179-192
    Che J, Zhou WW, Hu JS, Yan F, Papenfuss TJ, Wake DB et al (2010) Spiny frogs (Paini) illuminate the history of the Himalayan region and Southeast Asia. Proc Natl Acad Sci USA 107:13765-13770
    Qiu YX, Guan BC, Fu CX, Comes HP (2009) Did glacials and/or interglacials promote allopatric incipient speciation in East Asian temperate plants? Phylogeographic and coalescent analysis on refugial isolation and divergence in Dysosma versipellis. Mol Phylogenet Evol 51:281-293
    Wang L, Schneider H, Zhang XC, Xiang QP (2012) The rise of the Himalaya enforced the diversification of SE Asian ferns by altering the monsoon regimes. BMC Plant Biol 12:210
    Wang WJ, McKay BD, Dai CY, Zhao N, Zhang RY, Qu YH et al (2013) Glacial expansion and diversification of an East Asian montane bird, the green-backed tit (Parus monticolus). J Biogeogr 40:1156-1169
    Song G, Qu YH, Yin ZH, Li S-H, Liu N, Lei FM (2009) Phylogeography of the Alcippe morrisonia (Aves: Timaliidae): long population history beyond late Pleistocene glaciations. BMC Evol Biol 9:143
    Zou FS, Lim H-C, Marks BD, Moyle RG, Sheldon FH (2007) Molecular phylogenetic analysis of the Grey-cheeked Fulvetta (Alcippe morrisonia) of China and Indochina: a case of remarkable genetic divergence in a "species". Mol Phylogenet Evol 44:165-174
    Lovette IJ (2004) Mitochondrial dating and mixed support for the "2% Rule" in birds. Auk 121:1-6
    Bromham L, Penny D (2003) The modern molecular clock. Nat Rev Genet 4(3):216-224
    Welch JJ, Bromham L (2005) Molecular dating when rates vary. Trends Ecol Evol 20:320-327
    Teng LS (1990) Geotectonic evolution of late Cenozoic arc-continent collision in Taiwan. Tectonophysics 183:57-76
    Huang C-Y, Yuan PB, Tsao S-J (2006) Temporal and spatial records of active arc-continent collision in Taiwan: a synthesis. Geol Soc Am Bull 118:274-288
    Lee Y-H, Chen C-C, Liu T-K, Ho H-C, Lu H-Y, Lo W (2006) Mountain building mechanisms in the Southern Central Range of the Taiwan Orogenic Belt—From accretionary wedge deformation to arc—continental collision. Earth Planet Sci Lett 252:413-422
    Päckert M, Martens J, Severinghaus LL (2008) The Taiwan Firecrest (Regulus goodfellowi) belongs to the Goldcrest assemblage (Regulus regulus s. l.): evidence from mitochondrial DNA and the territorial song of the Regulidae. J Ornithol 150:205-220
    Wu HC, Lin RC, Hung H-Y, Yeh C-F, Chu J-H, Yang XJ et al (2011) Molecular and morphological evidences reveal a cryptic species in the Vinaceous rosefinch Carpodacus vinaceus (Fringillidae; Aves). Zool Scr 40:468-478
    Tietze DT, Päckert M, Martens J, Lehmann H, Sun Y-H (2013) Complete phylogeny and historical biogeography of true rosefinches (Aves: Carpodacus). Zool J Linn Soc 169:215-234
    McKay BD, Mays HL Jr, Yao C-T, Wan D, Higuchi H, Nishiumi I (2014) Incorporating color into integrative taxonomy: analysis of the varied tit (Sittiparus varius) complex in East Asia. Syst Biol 63:505-517
    Chou Y-W, Thomas PI, Ge X-J, LePage BA, Wang C-N (2011) Refugia and phylogeography of Taiwania in East Asia. J Biogeogr 38:1992-2005
    Jang-Liaw N-H, Lee T-H, Chou W-H (2008) Phylogeography of Sylvirana latouchii (Anura, Ranidae) in Taiwan. Zool Sci 25:68-79
    Jang-Liaw N-H, Chou W-H (2011) Phylogeography of the fanged dicroglossine frog, Limnonectes fujianensis (Anura, Ranidae), in Taiwan. Zool Sci 28:254-263
    Huang J-P, Lin C-P (2011) Lineage-specific late pleistocene expansion of an endemic subtropical gossamer-wing damselfly, Euphaea formosa, in Taiwan. BMC Evol Biol 11:94
    Lei FM, Qu YH, Lu JL, Liu Y, Yin ZH (2003) Conservation on diversity and distribution patterns of endemic birds in China. Biodivers Conserv 12:239-254
    Favre A, Päckert M, Pauls SU, Jähnig SC, Uhl D, Michalak I et al (2014) The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetn biotas. Biol Rev Camb Philos Soc 90:236-253
    Li Y, Zhai SN, Qiu YX, Guo YP, Ge XJ, Comes HP (2011) Glacial survival east and west of the 'Mekong-Salween Divide' in the Himalaya-Hengduan Mountains region as revealed by AFLPs and cpDNA sequence variation in Sinopodophyllum hexandrum (Berberidaceae). Mol Phylogenet Evol 59:412-424
    Kingdon-Ward F (1921) The Mekong-Salween divide as a geographical barrier. Geogr J 58:49-56
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